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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
19
total RNA-seq
5
ChIP-seq
4
pCHi-C
Assay category
50
DNA accessibility
19
Transcription
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
25
June, 2019
21
October, 2019
1
February, 2020
July, 2019
Available data
51
bed narrowPeak
25
bam
24
bigBed narrowPeak
24
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
Organism
78
Homo sapiens
Biosample type
74
tissue
4
primary cell
Organ
940
pancreas
780
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
60
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
78
AMP-T2D consortium
month_released!
July, 2019
December, 2018
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
renal pelvis
10
left renal pelvis
4
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primary cell
retinal pigment epithelial cell
1
3
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