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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
2
pCHi-C
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
43
DNA binding
35
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
6
March, 2020
4
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
91
Homo sapiens
Biosample type
80
tissue
11
primary cell
Organ
940
pancreas
780
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
60
eye
43
nerve
42
blood
42
bodily fluid
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
68
hg19
48
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
July, 2019
December, 2018
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
islet of Langerhans
4
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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