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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
94
DNA binding
73
DNA accessibility
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
36
February, 2023
35
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
190
bam
163
bigWig
157
tsv
147
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
328
Homo sapiens
Biosample type
253
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
666
connective tissue
587
liver
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
328
AMP
Genome assembly (visualization)
205
GRCh38
171
hg19
Lab
328
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
July, 2019
May, 2020
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
coronary artery
5
1
35
2
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
right cardiac atrium
6
18
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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