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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1226
total RNA-seq
1001
ChIP-seq
438
ATAC-seq
232
single cell RNA-seq
200
DNase-seq
87
RNA microarray
57
snATAC-seq
56
pCHi-C
46
WGBS
23
Hi-C
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
232
Transcription
Date released
106
August, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
6
February, 2021
5
April, 2018
3
December, 2019
July, 2019
3
May, 2023
1
February, 2023
Available data
208
tsv
fastq
103
bam
103
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
232
Homo sapiens
Biosample type
174
tissue
56
primary cell
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
5
pancreas
4
epithelium
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
125
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
114
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
month_released!
July, 2019
November, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
232 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
51
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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