Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
50
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
50
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
57
August, 2017
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
408
bigWig
407
bam
389
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
455
Homo sapiens
Biosample type
455
tissue
1
in vitro differentiated cells
Organ
877
pancreas
781
liver
637
connective tissue
503
epithelium
456
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
456
AMP
Genome assembly (visualization)
409
hg19
407
GRCh38
Lab
456
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
October, 2018
November, 2020
BIOSAMPLE
ASSAY
456 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
3
1
1
omental fat pad
1
1
2
+ See 2 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
Download