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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
43
ATAC-seq
11
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
45
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
73
bam
61
bigWig
56
tsv
52
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
112
Homo sapiens
Biosample type
66
cell line
46
tissue
Organ
922
pancreas
774
liver
662
connective tissue
478
adipose tissue
476
epithelium
320
heart
313
kidney
182
brain
177
vasculature
172
blood vessel
159
bone element
112
artery
86
musculature of body
69
blood
69
bodily fluid
48
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
112
AMP
Genome assembly (visualization)
104
GRCh38
69
hg19
Lab
112
AMP-T2D consortium
month_released!
July, 2019
October, 2019
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
35
5
2
pulmonary artery
2
tibial artery
1
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