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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
14
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
Assay category
79
DNA binding
26
DNA accessibility
18
Transcription
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
17
June, 2019
13
February, 2023
11
February, 2021
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
89
bam
82
bigWig
62
bed narrowPeak
58
fastq
20
bed bed3+
18
bigBed narrowPeak
15
tsv
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bedpe bed3+
Organism
129
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
496
epithelium
441
pancreas
428
liver
129
connective tissue
98
vasculature
93
blood vessel
75
heart
69
blood
69
bodily fluid
66
artery
48
kidney
37
embryo
22
vein
14
brain
11
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
128
AMP
1
T1D
Genome assembly (visualization)
99
hg19
80
GRCh38
Lab
124
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
July, 2019
organ_slims!
intestine
biosample_type!
tissue
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
2
5
1
1
cardiac fibroblast
5
3
mesenchymal stem cell
7
pancreatic stellate cell
4
adult endothelial progenitor cell
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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