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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
93
single cell RNA-seq
35
ATAC-seq
30
DNase-seq
10
total RNA-seq
3
Hi-C
3
pCHi-C
Assay category
128
DNA binding
103
Transcription
65
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
92
August, 2021
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
175
bed narrowPeak
147
bigWig
124
bam
105
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
3
bedpe bed3+
3
hic
Organism
302
Homo sapiens
Biosample type
293
tissue
8
primary cell
1
in vitro differentiated cells
Organ
908
pancreas
778
liver
479
epithelium
335
kidney
302
heart
268
brain
211
connective tissue
158
vasculature
153
blood vessel
111
limb
93
adipose tissue
86
musculature of body
72
artery
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
302
AMP
Genome assembly (visualization)
181
GRCh38
107
hg19
Lab
262
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
July, 2019
February, 2021
organ_slims!
intestine
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
3
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
35
2
1
heart
14
1
18
2
1
heart right ventricle
13
17
1
1
1
1
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primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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