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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
4
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
61
bigWig
60
bed narrowPeak
50
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
tsv
1
txt
Organism
82
Homo sapiens
Biosample type
71
tissue
11
primary cell
Organ
596
liver
539
pancreas
385
epithelium
306
heart
288
kidney
255
brain
205
connective tissue
168
vasculature
163
blood vessel
110
limb
97
bone element
90
adipose tissue
84
artery
82
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
66
hg19
46
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
July, 2019
organ_slims!
intestine
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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