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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
17
DNA binding
5
Transcription
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bam
50
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
5
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
60
Homo sapiens
Biosample type
49
tissue
11
primary cell
Organ
752
pancreas
727
liver
541
connective tissue
482
epithelium
422
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
69
blood
69
bodily fluid
60
eye
60
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
53
hg19
48
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
July, 2019
August, 2017
organ_slims!
intestine
BIOSAMPLE
ASSAY
60 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
muscle of arm
17
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
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