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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
4
Hi-C
1
DNAme array
1
RRBS
Assay category
418
Transcription
285
DNA accessibility
262
DNA binding
49
DNA methylation
4
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
576
bigWig
571
bam
409
fastq
282
bed narrowPeak
252
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
31
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
1035
Homo sapiens
Biosample type
2660
tissue
1035
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
29
kidney
27
blood vessel
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
506
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
580
hg19
506
GRCh38
Lab
471
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
1035 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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