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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
73
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
October, 2017
1
October, 2019
Available data
429
bam
412
bigWig
389
tsv
43
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
477
tissue
1
in vitro differentiated cells
Organ
935
pancreas
781
liver
665
connective tissue
511
epithelium
478
adipose tissue
343
kidney
328
heart
252
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
413
hg19
411
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
October, 2017
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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