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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
61
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
429
bam
411
bigWig
389
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
466
Homo sapiens
Biosample type
466
tissue
1
in vitro differentiated cells
Organ
867
pancreas
721
liver
633
connective tissue
467
adipose tissue
462
epithelium
328
kidney
303
heart
198
vasculature
194
blood vessel
159
bone element
151
brain
132
artery
102
limb
73
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
467
AMP
Genome assembly (visualization)
412
hg19
411
GRCh38
Lab
467
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
467 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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