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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
44
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
48
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
99
bam
82
bigWig
73
bed narrowPeak
57
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
73
tissue
66
cell line
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
139
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
35
5
2
tibial artery
1
1
23
2
pulmonary artery
2
gastric (mucosa of stomach)
1
cell line
smooth muscle cell of the coronary artery
52
8
6
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