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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
54
ChIP-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
54
DNA accessibility
54
DNA binding
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
May, 2019
24
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
126
bam
97
bigWig
86
bed narrowPeak
63
tsv
38
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
174
Homo sapiens
Biosample type
90
tissue
66
cell line
18
primary cell
Organ
862
pancreas
739
liver
622
connective tissue
467
epithelium
459
adipose tissue
328
kidney
311
heart
198
brain
179
vasculature
174
blood vessel
159
bone element
124
artery
83
limb
69
blood
69
bodily fluid
66
musculature of body
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
Genome assembly (visualization)
138
GRCh38
107
hg19
Lab
174
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
1
5
35
2
aorta
1
6
4
1
1
tibial artery
1
9
1
2
ascending aorta
1
8
1
thoracic aorta
9
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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