Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
218
DNA binding
35
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
229
bam
205
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
255
Homo sapiens
Biosample type
241
tissue
14
primary cell
Organ
596
liver
539
pancreas
385
epithelium
288
kidney
266
heart
255
brain
205
connective tissue
168
vasculature
163
blood vessel
110
limb
97
bone element
90
adipose tissue
84
artery
82
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
204
GRCh38
146
hg19
Lab
255
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
Download