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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
47
WGBS
26
ChIP-seq
8
DNase-seq
1
RNA microarray
Assay category
57
DNA accessibility
55
Transcription
47
DNA methylation
26
DNA binding
Target of assay
23
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
39
February, 2023
19
September, 2020
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
6
February, 2021
3
December, 2017
1
August, 2021
1
December, 2019
1
May, 2019
1
May, 2021
Available data
84
fastq
80
zippedFastqFolder
32
bam
16
bigWig
9
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
186
Homo sapiens
Biosample type
179
primary cell
cell line
4
in vitro differentiated cells
3
tissue
Organ
254
pancreas
218
kidney
195
heart
186
epithelium
121
brain
95
connective tissue
94
liver
89
bone element
67
blood vessel
67
vasculature
65
adipose tissue
46
artery
27
eye
21
limb
20
lung
18
musculature of body
12
nerve
11
spleen
8
blood
8
bodily fluid
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
37
AMP
Genome assembly (visualization)
hg19
240
GRCh38
Lab
149
Klaus Kaestner, Upenn
37
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
month_released!
July, 2019
biosample_type!
cell line
assembly!
hg19
BIOSAMPLE
ASSAY
186 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
DNase-seq
RNA microarray
primary cell
pancreatic alpha cell
42
29
31
6
pancreatic beta cell
11
16
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
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in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
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