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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
32
ChIP-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
73
DNA accessibility
32
DNA binding
3
3D chromatin structure
Target of assay
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
33
June, 2019
July, 2019
15
April, 2019
8
May, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
157
tsv
129
bam
101
bigWig
85
bed narrowPeak
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
266
Homo sapiens
Biosample type
193
tissue
66
cell line
6
primary cell
1
in vitro differentiated cells
Organ
789
pancreas
679
liver
588
connective tissue
447
adipose tissue
418
epithelium
313
kidney
266
heart
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
Genome assembly (visualization)
144
GRCh38
109
hg19
Lab
266
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
266 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
1
35
3
2
heart left ventricle
18
1
11
3
1
1
heart
1
2
2
18
1
heart right ventricle
17
1
2
1
1
1
right cardiac atrium
18
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
cardiac fibroblast
3
3
in vitro differentiated cells
cardiac fibroblast
1
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