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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
66
DNase-seq
51
ATAC-seq
3
Hi-C
3
pCHi-C
Assay category
162
Transcription
160
DNA binding
117
DNA accessibility
3
3D chromatin structure
Target of assay
111
histone
111
histone modification
71
broad histone mark
40
narrow histone mark
37
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
77
October, 2019
72
February, 2021
67
June, 2019
57
April, 2019
36
February, 2023
July, 2019
28
May, 2019
7
March, 2020
6
February, 2020
3
May, 2021
Available data
303
bam
253
bigWig
239
bed narrowPeak
178
bigBed narrowPeak
164
tsv
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
445
Homo sapiens
Biosample type
370
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
445
AMP
Genome assembly (visualization)
300
GRCh38
267
hg19
Lab
445
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
445 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
coronary artery
5
1
2
35
tibial nerve
35
5
2
1
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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