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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
66
DNase-seq
51
ATAC-seq
Hi-C
3
pCHi-C
Assay category
200
DNA binding
162
Transcription
117
DNA accessibility
Target of assay
146
histone
146
histone modification
91
broad histone mark
55
narrow histone mark
37
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
76
October, 2019
72
February, 2021
67
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
28
May, 2019
July, 2019
6
February, 2020
5
March, 2020
3
May, 2021
Available data
303
bam
293
bigWig
279
bed narrowPeak
178
bigBed narrowPeak
164
tsv
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
6
tagAlign
Organism
482
Homo sapiens
Biosample type
407
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
931
pancreas
778
liver
666
connective tissue
505
epithelium
479
adipose tissue
365
heart
342
kidney
268
brain
221
vasculature
216
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
482
AMP
Genome assembly (visualization)
340
GRCh38
264
hg19
Lab
442
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
July, 2019
assay_title!
Hi-C
BIOSAMPLE
ASSAY
482 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
left cardiac atrium
40
18
1
heart left ventricle
35
18
1
3
1
coronary artery
5
1
2
35
tibial nerve
35
5
2
1
heart
14
1
2
18
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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