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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
69
total RNA-seq
66
DNase-seq
51
ATAC-seq
3
Hi-C
3
pCHi-C
1
single cell RNA-seq
Assay category
200
DNA binding
117
DNA accessibility
70
Transcription
3
3D chromatin structure
Target of assay
146
histone
146
histone modification
91
broad histone mark
55
narrow histone mark
37
control
17
transcription factor
11
RNA binding protein
Date released
August, 2021
77
October, 2019
72
February, 2021
67
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
July, 2019
28
May, 2019
7
March, 2020
6
February, 2020
3
May, 2021
Available data
303
bam
293
bigWig
279
bed narrowPeak
178
bigBed narrowPeak
72
tsv
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
393
Homo sapiens
Biosample type
318
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
936
pancreas
746
liver
661
connective tissue
505
epithelium
478
adipose tissue
276
heart
268
brain
218
vasculature
213
blood vessel
213
kidney
159
bone element
136
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
393
AMP
Genome assembly (visualization)
340
GRCh38
267
hg19
Lab
353
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
July, 2019
August, 2021
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
coronary artery
5
1
2
35
tibial nerve
35
5
2
1
heart left ventricle
35
1
3
1
1
left cardiac atrium
40
1
heart
14
2
18
1
1
+ See 19 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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