Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
3
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
167
Transcription
155
DNA binding
25
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
281
bam
258
bigWig
147
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
353
Homo sapiens
Biosample type
401
cell line
353
tissue
15
in vitro differentiated cells
12
primary cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
254
brain
253
heart
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
353
AMP
Genome assembly (visualization)
261
hg19
231
GRCh38
Lab
313
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
July, 2019
BIOSAMPLE
ASSAY
353 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
165
145
20
2
3
1
1
1
1
right lobe of liver
1
10
1
2
Download