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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
33
DNase-seq
9
snATAC-seq
4
RRBS
4
total RNA-seq
2
ATAC-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
99
DNA binding
44
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
118
bigWig
114
bed narrowPeak
112
bam
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
155
Homo sapiens
Biosample type
75
tissue
61
cell line
19
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
8
T1D
Genome assembly (visualization)
123
hg19
102
GRCh38
Lab
147
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
month_released!
July, 2019
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
snATAC-seq
RRBS
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
+ See 3 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
See all biosamples
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