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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
total RNA-seq
92
ATAC-seq
80
single cell RNA-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
413
Transcription
DNA binding
103
DNA accessibility
6
3D chromatin structure
4
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
94
August, 2017
57
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
10
November, 2020
7
March, 2020
7
November, 2018
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
October, 2018
1
August, 2022
1
February, 2020
1
February, 2023
1
June, 2018
Available data
485
bam
446
bigWig
405
tsv
255
fastq
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
txt
4
bed bedMethyl
4
bedpe bed3+
4
bigBed bedMethyl
4
hic
1
bedpe
1
hdf5
Organism
539
Homo sapiens
Biosample type
354
tissue
124
primary cell
62
cell line
Organ
540
pancreas
512
connective tissue
406
adipose tissue
244
kidney
234
heart
229
liver
228
epithelium
158
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
540
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
484
hg19
462
GRCh38
Lab
497
AMP-T2D consortium
25
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
64
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
July, 2019
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
540 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
271
47
6
4
1
3
1
1
body of pancreas
1
4
4
2
pancreas
2
2
1
2
1
1
primary cell
pancreatic beta cell
10
7
12
pancreatic alpha cell
10
6
12
pancreatic acinar cell
4
5
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
19
6
1
2
1
Panc1
1
1
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