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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
88
ChIP-seq
6
ATAC-seq
6
WGBS
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
389
Transcription
88
DNA binding
7
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
45
histone
45
histone modification
27
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
18
October, 2019
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
450
bam
428
bigWig
389
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
494
Homo sapiens
Biosample type
476
tissue
18
primary cell
1
in vitro differentiated cells
Organ
933
pancreas
718
liver
657
connective tissue
489
epithelium
477
adipose tissue
338
heart
265
kidney
230
brain
207
vasculature
206
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
53
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
495
AMP
Genome assembly (visualization)
425
hg19
420
GRCh38
Lab
495
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
white adipose tissue
12
+ See 2 more…
primary cell
endothelial cell of umbilical vein
15
2
1
in vitro differentiated cells
white fat cell
1
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