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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
Assay category
44
DNA accessibility
32
DNA binding
7
Transcription
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
32
June, 2019
6
February, 2021
July, 2019
3
February, 2020
3
May, 2019
Available data
79
bam
58
bed narrowPeak
56
bigWig
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
83
Homo sapiens
Biosample type
83
tissue
Organ
862
pancreas
739
liver
622
connective tissue
467
epithelium
459
adipose tissue
328
kidney
291
heart
198
brain
179
vasculature
174
blood vessel
159
bone element
124
artery
83
limb
69
blood
69
bodily fluid
66
musculature of body
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
62
hg19
61
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
13
3
tibial artery
2
9
1
1
distal epiphysis of femur
1
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