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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
Assay category
43
DNA accessibility
32
DNA binding
7
Transcription
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
31
June, 2019
6
February, 2021
July, 2019
3
February, 2020
3
May, 2019
Available data
78
bam
57
bed narrowPeak
55
bigWig
49
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
Organism
82
Homo sapiens
Biosample type
82
tissue
Organ
787
pancreas
738
liver
608
connective tissue
458
adipose tissue
383
epithelium
306
heart
306
kidney
195
brain
178
vasculature
174
blood vessel
124
artery
82
limb
75
bone element
69
blood
69
bodily fluid
61
musculature of body
60
eye
27
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
82
AMP
Genome assembly (visualization)
61
hg19
60
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
broad histone mark
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
12
3
tibial artery
2
9
1
1
distal epiphysis of femur
1
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