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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
66
DNase-seq
51
ATAC-seq
3
Hi-C
3
pCHi-C
Assay category
162
Transcription
117
DNA accessibility
109
DNA binding
3
3D chromatin structure
Target of assay
146
histone
146
histone modification
broad histone mark
55
narrow histone mark
37
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
72
February, 2021
67
June, 2019
44
October, 2019
36
February, 2023
30
April, 2019
July, 2019
20
May, 2024
17
May, 2019
7
March, 2020
6
February, 2020
3
May, 2021
Available data
232
bam
202
bigWig
188
bed narrowPeak
164
tsv
110
bigBed narrowPeak
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
394
Homo sapiens
Biosample type
319
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
862
pancreas
739
liver
622
connective tissue
467
epithelium
459
adipose tissue
328
kidney
311
heart
198
brain
179
vasculature
174
blood vessel
159
bone element
124
artery
83
limb
69
blood
69
bodily fluid
66
musculature of body
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
394
AMP
Genome assembly (visualization)
249
GRCh38
196
hg19
Lab
374
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
394 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
tissue
heart left ventricle
20
18
1
3
1
1
coronary artery
5
1
2
35
left cardiac atrium
20
18
1
heart
6
1
2
18
1
heart right ventricle
6
17
1
1
1
1
+ See 24 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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