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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
5
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
47
bigWig
44
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
7
tagAlign
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
66
Homo sapiens
Biosample type
59
tissue
7
primary cell
Organ
862
pancreas
739
liver
622
connective tissue
467
epithelium
459
adipose tissue
328
kidney
311
heart
198
brain
179
vasculature
174
blood vessel
159
bone element
124
artery
83
limb
69
blood
69
bodily fluid
66
musculature of body
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
52
hg19
40
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
skeletal muscle tissue
10
4
1
1
1
muscle of leg
13
3
psoas muscle
2
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
4
skeletal muscle cell
1
2
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