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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
77
ChIP-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
5
pCHi-C
3
Hi-C
Assay category
155
Transcription
77
DNA binding
73
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
35
June, 2019
30
April, 2019
July, 2019
20
May, 2024
14
May, 2019
8
March, 2020
5
October, 2019
4
May, 2021
3
February, 2020
Available data
158
tsv
153
bam
146
bigWig
130
bed narrowPeak
60
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
313
Homo sapiens
Biosample type
238
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
862
pancreas
739
liver
622
connective tissue
467
epithelium
459
adipose tissue
328
kidney
311
heart
198
brain
179
vasculature
174
blood vessel
159
bone element
124
artery
83
limb
69
blood
69
bodily fluid
66
musculature of body
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
312
AMP
1
T1D
Genome assembly (visualization)
188
GRCh38
134
hg19
Lab
292
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
313 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
heart left ventricle
18
20
1
3
1
1
coronary artery
5
1
35
2
left cardiac atrium
18
20
1
heart
1
6
2
18
1
heart right ventricle
17
6
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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