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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
65
ChIP-seq
Assay category
204
DNA accessibility
65
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
other post-translational modification
Date released
187
June, 2019
63
November, 2017
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3023
bam
2807
bigWig
1663
bed narrowPeak
1446
tsv
1066
fastq
993
bigBed narrowPeak
313
tagAlign
280
bed broadPeak
269
bigBed broadPeak
236
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedMethyl
7
bed bedgraph
7
bigBed bedMethyl
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
269
Homo sapiens
Biosample type
176
tissue
58
cell line
35
primary cell
Organ
78
kidney
62
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
269
AMP
Genome assembly (visualization)
253
GRCh38
246
hg19
Lab
269
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
July, 2019
August, 2017
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
269 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
57
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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