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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
109
Transcription
27
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
27
June, 2019
21
May, 2019
16
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
1
February, 2023
Available data
153
bigWig
134
bed narrowPeak
128
bam
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
274
Homo sapiens
Biosample type
274
tissue
58
cell line
13
primary cell
1
in vitro differentiated cells
Organ
541
connective tissue
482
adipose tissue
443
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
274
AMP
Genome assembly (visualization)
152
GRCh38
109
hg19
Lab
234
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
June, 2018
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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