Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
583
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
583
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
232
August, 2017
166
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
97
October, 2019
82
May, 2019
71
July, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
36
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
25
May, 2024
20
November, 2019
19
April, 2020
16
February, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1600
bam
1461
bigWig
1075
tsv
510
bed narrowPeak
450
bigBed narrowPeak
320
fastq
199
bed bed3+
196
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2186
Homo sapiens
Biosample type
2193
tissue
770
primary cell
614
cell line
297
in vitro differentiated cells
9
stem cell
Organ
528
connective tissue
470
adipose tissue
411
pancreas
296
liver
236
heart
214
kidney
147
brain
146
bone element
99
limb
77
blood vessel
77
vasculature
72
musculature of body
34
nerve
30
artery
26
eye
22
spleen
20
lung
18
ureter
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2109
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
1450
GRCh38
1394
hg19
Lab
1985
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
25
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2018
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2193 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
298
34
1
7
4
3
1
1
4
liver
167
103
2
1
3
1
1
1
1
kidney
49
17
13
64
6
1
1
1
bone element
84
+ See 108 more…
See all biosamples
Download