Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
110
Transcription
64
DNA binding
3
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
24
transcription factor
22
histone
22
histone modification
21
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
3
nucleotide modification
2
RNA binding protein
Date released
87
February, 2021
44
August, 2021
30
October, 2019
15
November, 2019
9
March, 2020
6
February, 2023
6
November, 2020
5
May, 2021
2
March, 2023
1
May, 2020
1
October, 2022
Available data
572
bam
519
bigWig
fastq
394
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
202
Homo sapiens
Biosample type
2169
tissue
511
primary cell
211
in vitro differentiated cells
206
cell line
6
stem cell
Organ
73
pancreas
60
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
33
liver
19
kidney
8
embryo
1
mammary gland
Project
195
AMP
9
T1D
2
community
Genome assembly (visualization)
150
hg19
133
GRCh38
Lab
159
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
73
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
June, 2018
assay_title!
ATAC-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
206 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
33
15
6
3
1
2
2
1
smooth muscle cell of the coronary artery
52
6
HepG2
9
18
2
2
1
1
Panc1
13
1
1
H1-hESC
8
+ See 13 more…
See all biosamples
Download