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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
73
DNA binding
6
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
56
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
June, 2019
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
83
Homo sapiens
Biosample type
83
tissue
1
in vitro differentiated cells
Organ
594
liver
379
pancreas
266
epithelium
256
brain
255
kidney
181
connective tissue
178
heart
122
vasculature
116
blood vessel
107
limb
89
bone element
86
musculature of body
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
28
eye
23
embryo
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
84
AMP
Genome assembly (visualization)
23
GRCh38
22
hg19
Lab
84
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
June, 2018
assay_title!
ATAC-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
2
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
1
in vitro differentiated cells
white fat cell
1
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