Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
January, 2018
Available data
15
tagAlign
14
bed narrowPeak
14
bigWig
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
42
Homo sapiens
Biosample type
39
tissue
3
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
69
brain
66
adipose tissue
55
eye
45
vasculature
43
blood vessel
42
musculature of body
26
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
7
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
72
hg19
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
June, 2018
January, 2018
assembly!
GRCh38
BIOSAMPLE
ASSAY
42 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
Download