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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
184
single cell RNA-seq
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
280
DNA accessibility
195
DNA binding
186
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
51
May, 2021
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
32
October, 2019
18
July, 2019
12
February, 2023
9
November, 2017
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
June, 2018
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
374
bigWig
372
bam
286
fastq
211
bed narrowPeak
153
zippedFastqFolder
117
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
730
Homo sapiens
Biosample type
1716
tissue
730
primary cell
542
cell line
258
in vitro differentiated cells
10
stem cell
Organ
312
epithelium
264
pancreas
35
vasculature
30
kidney
29
blood vessel
28
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
497
AMP
232
HPAP
T1D
1
ITG
Genome assembly (visualization)
389
hg19
299
GRCh38
Lab
464
AMP-T2D consortium
232
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2018
award.project!
T1D
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
730 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
13
12
31
1
pancreatic beta cell
23
13
12
16
1
CD8-positive, alpha-beta T cell
2
33
pancreatic acinar cell
9
8
12
1
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