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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
360
total RNA-seq
229
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
360
Transcription
Date released
79
February, 2021
76
February, 2023
59
May, 2021
47
May, 2020
26
September, 2018
17
August, 2021
16
September, 2020
13
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
4
November, 2020
2
October, 2018
1
November, 2019
Available data
263
tsv
256
bigWig
254
bam
125
fastq
2
bed bed3+
Organism
360
Homo sapiens
Biosample type
1037
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
127
epithelium
114
pancreas
56
heart
54
artery
54
blood vessel
54
vasculature
19
liver
10
connective tissue
10
kidney
8
embryo
1
adipose tissue
1
musculature of body
1
pericardium
Project
170
AMP
98
T1D
92
HPAP
Genome assembly (visualization)
256
hg19
254
GRCh38
Lab
161
AMP-T2D consortium
98
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
9
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
month_released!
June, 2018
BIOSAMPLE
ASSAY
360 results
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total RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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