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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
16
histone
16
histone modification
15
transcription factor
11
chromatin remodeller
10
narrow histone mark
6
RNA binding protein
6
broad histone mark
1
recombinant protein
Date released
21
November, 2017
5
August, 2017
5
November, 2018
Available data
31
bam
31
bigWig
31
fastq
29
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
Organism
31
Homo sapiens
Biosample type
26
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
26
liver
4
epithelium
4
pancreas
Project
31
AMP
Genome assembly (visualization)
31
hg19
27
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
June, 2018
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
26
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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