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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
3
MeRIP-seq
3
single cell RNA-seq
Assay category
112
DNA binding
3
Transcription
Target of assay
371
transcription factor
275
histone
275
histone modification
141
broad histone mark
134
narrow histone mark
118
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
59
November, 2017
13
August, 2017
12
October, 2019
8
June, 2019
5
August, 2021
3
February, 2021
3
January, 2019
3
July, 2019
3
May, 2021
3
November, 2018
3
November, 2020
2
November, 2019
1
May, 2019
Available data
108
bam
78
fastq
23
bigWig
6
tagAlign
3
tsv
Organism
118
Homo sapiens
Biosample type
187
tissue
83
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
61
liver
26
epithelium
23
pancreas
6
blood
6
bodily fluid
6
brain
6
kidney
6
vasculature
5
blood vessel
4
heart
3
connective tissue
2
artery
2
musculature of body
2
vein
1
eye
Project
118
AMP
Genome assembly (visualization)
23
hg19
3
GRCh38
Lab
108
AMP-T2D consortium
4
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
13
inconsistent ontology term
month_released!
June, 2018
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
MeRIP-seq
single cell RNA-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
+ See 4 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
2
cerebellar granule cell
2
+ See 14 more…
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