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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
22
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
38
DNA binding
24
DNA accessibility
Target of assay
33
histone
33
histone modification
18
narrow histone mark
15
broad histone mark
5
RNA binding protein
5
transcription factor
Date released
23
June, 2019
14
September, 2018
11
October, 2019
5
August, 2017
5
September, 2017
4
May, 2019
Available data
610
bigWig
606
bam
406
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
62
Homo sapiens
Biosample type
385
tissue
302
cell line
62
primary cell
16
in vitro differentiated cells
Organ
41
epithelium
22
pancreas
11
blood vessel
11
vasculature
11
vein
9
connective tissue
8
musculature of body
6
kidney
3
heart
2
eye
Project
62
AMP
Genome assembly (visualization)
62
hg19
60
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
June, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
pancreatic alpha cell
6
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