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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
59
DNA binding
52
DNA accessibility
Target of assay
49
histone
49
histone modification
26
narrow histone mark
23
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
15
October, 2019
14
September, 2018
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
610
bigWig
606
bam
406
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
111
Homo sapiens
Biosample type
561
tissue
361
cell line
111
primary cell
17
in vitro differentiated cells
Organ
63
epithelium
23
vasculature
22
pancreas
19
blood vessel
16
kidney
15
connective tissue
15
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
111
AMP
Genome assembly (visualization)
105
GRCh38
104
hg19
Lab
111
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
June, 2018
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
12
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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