Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
184
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
50
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
Assay category
427
Transcription
217
DNA accessibility
55
DNA methylation
50
DNA binding
10
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
27
September, 2018
26
August, 2017
24
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
7
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
582
bigWig
575
bam
406
fastq
bed narrowPeak
261
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
776
Homo sapiens
Biosample type
1647
tissue
776
primary cell
262
in vitro differentiated cells
247
cell line
8
stem cell
Organ
299
epithelium
277
pancreas
22
connective tissue
16
vasculature
14
blood vessel
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
331
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
328
hg19
266
GRCh38
Lab
326
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
25
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2018
organ_slims!
kidney
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
776 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
31
1
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
+ See 81 more…
See all biosamples
Download