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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
231
total RNA-seq
198
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
15
pCHi-C
13
DNase-seq
9
Hi-C
6
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
412
Transcription
268
DNA accessibility
252
DNA binding
54
DNA methylation
9
3D chromatin structure
Target of assay
219
histone
219
histone modification
113
broad histone mark
106
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
25
June, 2019
23
October, 2019
16
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
550
bigWig
539
bam
403
fastq
256
bed narrowPeak
246
tsv
153
zippedFastqFolder
100
tagAlign
78
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
19
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1010
Homo sapiens
Biosample type
1931
tissue
1010
primary cell
643
cell line
297
in vitro differentiated cells
9
stem cell
Organ
405
epithelium
345
pancreas
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
482
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
566
hg19
473
GRCh38
Lab
447
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
32
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2018
organ_slims!
kidney
connective tissue
BIOSAMPLE
ASSAY
1010 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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