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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
165
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
25
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
292
DNA binding
236
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
106
August, 2017
101
February, 2021
95
February, 2023
82
October, 2019
47
September, 2023
46
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1907
bam
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
984
Homo sapiens
Biosample type
986
tissue
475
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
910
AMP
47
KPMP
29
T1D
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
714
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
month_released!
June, 2018
lab.title!
Xin Sun, UCSD
files.file_type!
bigWig
BIOSAMPLE
ASSAY
986 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
4
7
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
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