Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
673
ChIP-seq
634
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
828
Transcription
673
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
214
October, 2019
204
August, 2017
170
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
94
February, 2023
93
May, 2019
70
November, 2017
67
July, 2019
66
April, 2019
66
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
40
October, 2018
39
March, 2020
39
November, 2019
36
December, 2017
23
February, 2020
22
November, 2018
19
April, 2020
19
October, 2017
14
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
November, 2020
1
August, 2022
1
January, 2018
Available data
1349
bigWig
1319
bam
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
286
fastq
210
bed broadPeak
196
bed bed3+
179
tagAlign
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2119
Homo sapiens
Biosample type
2126
tissue
1048
primary cell
579
cell line
356
in vitro differentiated cells
9
stem cell
Organ
523
connective tissue
476
pancreas
adipose tissue
315
liver
297
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2029
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1434
GRCh38
1328
hg19
Lab
1776
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2018
organ_slims!
adipose tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
2126 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
58
292
68
6
1
7
4
3
1
1
2
liver
102
167
20
1
2
1
3
1
1
1
kidney
21
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
29
3
2
18
3
1
4
1
1
+ See 169 more…
See all biosamples
Download