Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1907
bam
1772
bigWig
1075
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
207
Homo sapiens
Biosample type
213
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
213
AMP
Genome assembly (visualization)
196
hg19
191
GRCh38
Lab
211
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
June, 2018
organ_slims!
large intestine
BIOSAMPLE
ASSAY
213 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
See all biosamples
Download