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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
312
DNA binding
184
DNA accessibility
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
89
May, 2019
59
April, 2019
57
November, 2017
47
October, 2019
30
October, 2018
22
August, 2017
10
November, 2018
6
January, 2019
6
October, 2017
5
December, 2017
2
July, 2019
Available data
1818
bam
1679
bigWig
1076
tsv
909
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
490
Homo sapiens
Biosample type
496
tissue
99
primary cell
27
cell line
15
in vitro differentiated cells
Organ
116
brain
87
kidney
84
limb
81
heart
59
blood vessel
59
vasculature
52
pancreas
38
musculature of body
26
nerve
24
artery
18
ureter
14
liver
7
spleen
5
adipose tissue
5
connective tissue
3
eye
Project
496
AMP
Genome assembly (visualization)
490
GRCh38
428
hg19
Lab
496
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
June, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
496 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
kidney
18
13
1
heart left ventricle
23
3
tibial nerve
24
2
heart
7
18
body of pancreas
17
4
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