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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1160
total RNA-seq
959
ChIP-seq
428
ATAC-seq
233
single cell RNA-seq
196
DNase-seq
58
WGBS
57
snATAC-seq
47
pCHi-C
28
Hi-C
18
small RNA-seq
15
RRBS
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
4
August, 2021
Organism
4
Homo sapiens
Biosample type
4
cell line
Organ
2
kidney
2
liver
Project
4
AMP
Lab
4
Bing Ren, UCSD
Audit category:
inconsistent ontology term
month_released!
June, 2018
files.file_type!
fastq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
4 results
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STARR-seq
cell line
HEK293T
2
HepG2
2