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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
6
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
11
Transcription
4
DNA accessibility
Date released
89
February, 2021
August, 2021
7
May, 2022
3
February, 2023
1
October, 2022
Available data
3332
bam
3119
bigWig
1703
bed narrowPeak
1474
tsv
1355
fastq
1042
bigBed narrowPeak
374
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
153
zippedFastqFolder
100
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
99
Homo sapiens
Biosample type
96
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
skeleton
1
musculature of body
Project
100
AMP
Genome assembly (visualization)
4
hg19
Lab
91
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
June, 2018
August, 2021
organ_slims!
skeleton
BIOSAMPLE
ASSAY
100 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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